Summary

• Marathon offers beautiful islands in the Keys with excellent fishing and water sports opportunities, along with laid-back charm and captivating beaches.
• This article provides a list of top-rated hotels in Marathon that offer a range of accommodations and amenities to suit different travelers' preferences and budgets.
• All hotels mentioned in the article have a minimum user rating of 8.0 and are praised for their excellent amenities, friendly staff, and proximity to popular attractions.

Many tourists love vacationing in famous cities in Florida, from Miami to Orlando, for their incredible foodie spots and diverse experiences. However, Marathon is another beautiful city that encompasses several islands in the Keys, offering excellent fishing opportunities and exciting water sports. Add to that its laid-back charm, beautiful waterfront restaurants, and captivating beaches for relaxing.

Amidst Marathon’s beauty also lies a vast collection of top-rated hotels that travelers can book for a memorable fall getaway. Each hotel has incredible amenities and a wide range of distinct accommodations to suit various travelers. Others are in proximity to sandy shores or some of the most beautiful places tourists can visit in Florida this fall. Whatever the interest, this article takes travelers through the best hotels in Marathon, Florida, where they can celebrate autumn in style.

All hotels included in this article have a minimum user rating of 8.0, meaning past visitors commend them for their excellent amenities, friendly staff, and closeness to popular attractions. Their prices differ, too, so vacationers with different budgets can pick what suits their pockets.

Related: 10 Best Towns To Catch Fall Foliage In Upstate New York (If You're Flying From Florida)

Skipjack Resort & Marina

Skipjack Resort & Marina is a laid-back escape featuring a casual restaurant, a tiki bar, a private marina, and well-appointed guestrooms. This luxurious tropical oasis is also family-friendly and provides up to three connected suites, creating enough space for up to 12 guests to socialize and rest. With the fall ushering in the perfect temperatures for sunbathing, guests luxuriate on cushioned lounges as they sample signature cocktails and brews. Additionally, regularly appearing local musicians add a touch of island life as they entertain visitors with live music at the tiki bar.

Coconut Cay Resort & Marina

The Coconut Cay Resort & Marina is a Bahamian-style hideaway near the stunning Sombrero Beach and Bahia Honda State Park. Adventurous travelers have an unforgettable experience at the beach and park, as the resort provides complimentary kayaks, paddle boards, and fishing poles. After a fun and adventure-filled day of exploring the waterways, visitors find comfort and rest in the airy accommodations offering garden, pool, or canal views. The guest rooms are suitable for solo, group travelers, and pet lovers, and some feature dining areas, full kitchens, and patios.

Related: 10 Epic Places To Celebrate Fall In Florida

Seascape Resort & Marina

Seascape Resort & Marina is a tranquil hidden gem with a private marina, a beautiful outdoor pool, and cozy accommodations. The resort sits on a beautiful tropical landscape and features island-inspired suites accommodating up to six guests. The suites offer free Wi-Fi, flat-screen TVs, and bathrooms with complimentary toiletries. Some have a private patio to enjoy the tropical breeze and breathtaking ocean views.

The resort's secluded location ensures vacationers enjoy a sun-filled fall getaway as they lounge along the poolside or utilize the barbecue facilities when socializing with loved ones. Additionally, this hotel is less than an hour from Key Largo, Florida's prettiest Key, and with the most scenic views.

Fairfield by Marriott Inn & Suites Marathon Florida Keys

This charming hotel offers vacationers a memorable tropical fall getaway in the Middle Keys. Holidaymakers rent ski jets, kayaks, and paddleboards from the on-site marina for thrilling water-based activities. On the other hand, vacationers craving a slower pace of life and relaxation laze around the two outdoor heated pools. The nearby Sparky's Landing Tiki Bar and Restaurant offers everything from delicious seafood to refreshing tropical drinks as visitors chill out and enjoy live music.

Aqua Lodges at Coconut Cay RV and Marina

SeaWorld Orlando is a place where tourists can unleash their inner marine biologist, and so is Florida Keys Aquarium Encounters, which is less than three miles from Aqua Lodges at Coconut Cay RV and Marina. The hotel provides tropical-inspired air-conditioned rooms with flat-screen TVs, closets, and fridges, with some having balconies offering sea views.

Additional amenities include access to private parking, complimentary bicycles, and an inviting outdoor pool. The hotel also has a private beach, where guests take advantage of the mild fall temperatures to sunbathe with a book in hand.

Related: Key West Lighthouse And Beyond: Day Trips, Snorkeling Tours, And Island Hopping Adventures

Captain Pips Marina & Hideaway

Captain Pips Marina & Hideaway is one of Marathon's best resort-style hotels to book in autumn, within walking distance from restaurants and local attractions. This hotel offers boat rentals at a 10% discount to its guests, snorkeling gear to explore the nearby bay and ocean, and bicycles for on-land excursions. The accommodations range from motel-style rooms to one and two-bedroom apartments with blue water, canal, or garden views. All the rooms feature microwaves and fridges, but an upgrade to the studios and apartments rewards guests with kitchenettes and gas barbecue grills on the patio.

Courtyard by Marriott Faro Blanco Resort

Courtyard by Marriott Faro Blanco Resort is one of the best hotels in Marathon, immersing vacationers into the exhilarating island life with unique activities and amenities. Holidaymakers start their mornings with a hearty breakfast at The Bistro before going for guided snorkeling excursions or lounging at one of the two pool decks. The Blue Waters Pool & Grill serves local fare, such as fish tacos, while guests admire Marathon views. The hotel transforms into a nighttime paradise as visitors celebrate the day-to-night transition with music and enchanting lights at the Eventide Celebration.

Related: 10 Cozy Towns In Florida That Feel Like Fall, Even When It's Warm Out

Grassy Flats Resort & Beach Club

Grassy Flats Resort & Beach Club is a beachfront paradise for travelers seeking oceanfront views and world-class watersports. As one of the top hotels in Marathon, Grassy Flats Resort promises an adventure-filled fall vacation with its private beach offering excellent kiteboarding opportunities. When it is time to recharge, solo travelers and couples rest in one-bedroom suites featuring balconies offering dazzling ocean views, especially during sunrise.

On the other hand, group travelers stay in the spacious Conch House two or three-bedroom suites with fully equipped kitchens. This hotel is also less than a 30-minute drive to Bahia Honda State Park, which offers visitors epic things to do.

Isla Bella Beach Resort

Isla Bella Beach Resort is a beach lover's haven with its easily accessible white sandy beach and eye-catching ocean views from every room and suite. The contemporarily decorated accommodations have a blue and white decor and floor-to-ceiling glass doors leading to expansive terraces. This roomy outdoor area provides a scenic space to lounge, dine, and star gaze. Travelers seeking pampering and tranquility in the fall find it at the Spa at Isla Bella, offering everything from classic hot stone massages to revitalizing skin treatments.

Tranquility Bay Beachfront Resort

This beachfront resort stays true to it by providing a retreat where guests either relax and forget their worries or venture out to explore the blue waters. Water sports lovers ride the waves with rented Waverunners accommodating up to three riders, while newbie scuba divers get certified. At the same time, sunbathers suntan along the pearly white stretch of sand or nap under the palms along the enticing lagoon-style pool. In the evening, guests embark on a scenic sunset cruise and return to welcoming Garden Guest Rooms outfitted with upscale amenities.